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IRG 2 Publications

  1. Ouyang, Z., Tan, L., Liu, M., Judge, O. S., Zhang, X., Li, H., Hu, J., Patten, T. E., Liu, G. Y.; “A Simple Miniaturization Protocol to Produce Multi-Component Micro- and Nano-Structures”. SMALL, 7, 884-887, 2006.

  2. Pu, G., Borden, M. L., Longo, M. L., “Collapse and Shedding Transitions in Binary Lipid Monolayers Coating Microbubbles”, Langmuir, 22: 2993-2999, 2006.

  3. Blanchette, C. D., Lin, W-C, Ratto, T. V., Longo, M. L. “Galactosylceramide Domain Microstructure: Impact of Cholesterol and Nucleation and Growth Conditions”, Biophysical Journal, 90, 4466-4478, 2006.

  4. Yoshina-Ishii, C., Miller, G. P., Kraft, M. L. Kool, E. T., Boxer, S. G.; “General Method for Modification of Liposomes for Encoded Assembly on Supported Bilayers”. Journal of the American Chemical Society, 127, 1356-1357, 2005.

  5. Forstner, M. B., Yee, C.K., Parikh, A.N., Groves, J.T.; “Lipid Lateral Mobility and Membrane Phase Structure Modulation By Protein Binding”. J. Am. Chem. Soc. 128, 47, 15221­-15227, 2006.

  6. Talu, E., Lozano, M. M., Powell, R.L., Dayton, P., Longo, M.L., “Long-term Stability by Lipid Coating Monodisperse Microbubbles Formed by a Flow Focusing Device”, Langmuir, 22 :9487-9490, 2006.

  7. Price, W. J., Leigh, S. A., Hsu, S. M., Patten, T. E., Liu, G. Y.; “Measuring the Size Dependence of Young’s Modulus Using Force Modulation Atomic Force Microscopy”. J. Phys. Chem.., 110, 1382-1388, 2006.

  8. Blanchette, C. D., Ratto, T. V., Longo, M. L.; “Model Cell Membrane Surfaces For Measuring Receptor-Ligand Interactions”. Cellular Engineering: Micromechanics at the Biomolecular Interface, editor M. R. King, Elsevier Science, 195-211, 2006.

  9. Kraft, M. L., Weber, P. K., Longo, M. L., Boxer, S. G., Hutcheon, I. D., “Phase Separation of Lipid Membranes Analyzed with High-Resolution Secondary-Ion Mass Spectrometry”, Science, 313, 1948-1951, 2006.

  10. Kasson, P., Pande, V. S.;  “Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion Peptide”.  PSB, 2006

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    Glazer, M.I., Fidanza, J.A., McGall, G.H., Trulson, M.O., Forman, J.E., Frank, C.W.; “Kinetics of Oligonucleotide Hybridization to DNA Probe Arrays on High-Capacity Porous Silica Substrates,” Biophysical Journal, 93, 1661-1676, 2007.

     

    Stalgren, J.J.R., Botschkova, K., Ericsson, J.-C., Frank, C.W., Knoll, W., Satija, S., Toney, M.F.; “Enrichment of Deuterium Oxide at Hydrophilic Interfaces in Aqueous Solutions,” Langmuir, 23, 11943-11946, 2007.

     

    Shen, Y., Powell, R. L., Longo, M. L.; “Interfacial and Stability Study of Microbubbles Coated with a Monostearin/Monopalmitin-Rich Food Emulsifier and PEG40 Stearate”, Journal of Colloid and Interface Science, 321, 186–194, 2008.

     

    Lee, J.S., Dylla-Spears, R., Teclemariam, N.P., Muller, S.J.; “Microfluidic Four-Roll Mill for all Flow Types”. Applied Physics Letters, 90, 074103, 2007.

    Kasson, P., Pande, V. S.; “Ensemble Molecular Dynamics Simulation Predicts Membrane Fusion Mechanism Controlled by Lipid Composition”. PloS Computational Biology, 3, 220, 2007

     

    Kasson. P., Zomorodian, A., Park, S., Singhal, N., Guibas, L., Pande, V. S.; “Persistent Voids: a New Structural Metric for Membrane Fusion”. Bioinformatics, 23, 1753-9, 2007.

     

    Lee, J.S., Shaqfeh, E.S.G., Muller, S.J.; “Dynamics of DNA Tumbling in Shear to Rotational Mixed Flows: Pathways and Periods”. Phys. Rev. E., 75, 040802(R), 2007.

     

    Teixeira, R., Dambal, A.K., Richter, D.H., Shaqfeh, E.S.G., Chu, S.; “The Individualistic Dynamics of Entangled DNA in Solution”. Macromolecules, 40, 7, 2461-2476, 2007.

     

  12. Tanaka, M., Hermann, J., Haase, I., Fischer, M., Boxer, S.; “Frictional Drag and Electrical Manipulation of Recombinant Proteins in Polymer Supported Membranes”. Langmuir, 23, 5638-5644, 2007.

     

    Chan, Y.-H., Lenz, P., Boxer, S.; “Kinetics of DNA-Mediated Docking Reactions between Vesicles Tethered to Supported Lipid Bilayers”. Proceedings of the National Academy of Sciences, 104, 18913-18918, 2007.

     

    ChanY.-H., Boxer,S. “Model Membrane Systems and their Applications”. Current Opinion in Chemical Biology, 11, 581-587, 2007.

     

    Lin, W-C., Blanchette, C. D., Longo, M.L.; “Fluid-Phase Chain Unsaturation Controlling Domain Microstructure and Phase in Ternary Lipid Bilayers Containing GalCer and Cholesterol”. Biophysical Journal, 92, 2831-2841, 2007.

     

    Blanchette, C. D., Lin, W-C., Orme, C. A., Ratto, T. V., Longo, M. L., “Using Nucleation Rates to Determine Interfacial Line Tension of Symmetric and Asymmetric Lipid Bilayer Domains”. Langmuir, 23, 5875-5877, 2007.

     

    Blanchette, C. D., Orme, C. A., Ratto, T. V., Longo, M. L.; “Quantifying Growth of Symmetric and Asymmetric Lipid Bilayer Domains”. Molecular and Surface Forces, Langmuir Special Issue, 24, 1219-1224, 2008.

     

    Blanchette, C. D., Lin, W-C., Orme, C. A., Ratto, T. V, Longo, M. L., “Domain Nucleation Rates and Interfacial Line Tensions in Supported Bilayers of Ternary Mixtures Containing Galactosylceramide”. Biophysical Journal, 94, 2691–2697, 2008.

     

    Kasson, P., Pande, V. S.; “Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion Peptide.” Pacific Symposium on Biocomputing, 12, 40-50, 2007.

     

    Teclemariam, N.P., Beck, V.A., Shaqfeh, E.S.G., Muller, S.J.; “Dynamics of DNA Polymers in Post Arrays: Comparison of Single Molecule Experiments and Simulations”. Macromolecules, 40, 3848-3859, 2007.

    Lueth, C.A., Shaqfeh, E.S.G., “Tethered DNA Shear Dynamics in the Flow Gradient Plane: Application to Double Tethering”. Korea-Australia J. Rheol., 19, 3, 141-146, 2007.

     

    Beck, V.A., Shaqfeh, E.S.G., “Ergodicity-Breaking and the Unravelling Dynamics of a Polymer in Linear and Non-Linear Extensional Flows”. J. Rheol., 51, 3, 561-574, May/June, 2007.

     

    Hoffman, B., Shaqfeh, E.S.G., “The Dynamics of the Coil-Stretch Transition for Long, Flexible Polymers in Planar Mixed Flows”. J. Rheol., 51, 5, 947-969, 2007 (see also Virtual Journal of Biological Physics Research September 1, 2007.)

  13. Kasson, P., Kelley, N., Singhal, N., Vrjlic, M., Brunger, A.,  Pande, V. S.;  “Sub-Millisecond Kinetics and Intermediates of Membrane Fusion from Molecular Dynamics”.  Proceedings of the National Academy of Sciences, USA, 103 11916-21, 2006.